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| 21. Inferring Phylogenies by Joseph Felsenstein | |
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our price: $61.95 (price subject to change: see help) Asin: 0878931775 Catlog: Book (2003-09-04) Publisher: Sinauer Associates Sales Rank: 63088 Average Customer Review: US | Canada | United Kingdom | Germany | France | Japan |
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Book Description As phylogenies are inferred with various kinds of data, this book concentrates on some of the central ones: discretely coded characters, molecular sequences, gene frequencies, and quantitative traits. Also covered are restriction sites, RAPDs, and microsatellites. Inferring Phylogenies is intended for graduate-level courses, assuming some knowledge of statistics, mathematics (calculus and fundamental matrix algebra), molecular sequences, and quantitative genetics. Reviews (3)
The only weak thing about about the book (besides the many typos, which should be fixed in the new printing anyway), is Felsenstein's rather acrimonious treatment of Bayesian methods, in which the Bayesian use of priors is criticized on philosophical grounds. I was annoyed by this not because I'm a card-carrying Bayesian (which I'm certainly not), but rather because I would have thought that Felsenstein of all people, whose primary opponents in the 1980's were the members of the philosophically-minded Willi Hennig crowd (who always claimed that parsimony was "philosophically right" even when it gave the wrong answer), would realize the futility of arguing scientific issues on philosophical grounds. Bayesian methods, as all scientific methods, will win or lose based on how well they work in practice, despite turgid philosophizing on both sides of the issue.
The book is a goldmine. Among phylogeny programs, PHYLIP (supported since 1980) could well be the most popular - Felsenstein wrote it. In this, he covers an incredible number of techniques, drawn from dozens of fundamentally different insights into the problem of relatedness. Felsentein desribes many techniques, their variations, and their relationships to others. He describes every phase of the analysis, from interpreting raw data, through deducing trees and evaluating them statistically, to displaying them visually. Despite this book's thud factor - ove 600 pages - it can not cover every topic in full detail. That's when the book's references, about 50 pages of them, become valuable. Felsenstein welcomes the interested reader into every aspect of the field's literature. Despite the huge body of theory and practice, there are still many disputes about the proper interpretations or approaches to some thorny issues. Felsenstein goes over the issues in some detail, and is not afraid to take sides when he sees reason to. Felsenstein gives clear descriptions of many basic algorithms. There's no code here, but a diligent reader should be able to develop implementations of them. I could have hoped for better indexing of algorithms, but the chapter organization is clear enough to make any search brief. I could also have asked for more of the algorithms to be spelled out in implementable detail, but the book would have needed thousands of pages to include them all. He seems to have chosen a variety of well-known and important algorithms for full description, and left the minor or complex ones for the references. If you just want to use one of the common phylogeny programs, you came to the wrong place. This is about fundamental techniques for creating programs - there's almost nothing here for the user who just wants the results. Such users won't even learn much more about the results they do get. Developers and statisticians who need detailed analyses will probably find what they they want, and lots more. The only problem with the book is that it reads like an encyclopedia. Lots of developers can get lots of good work done without this level of knowledge. It will take a truly devoted reader to plow though it, as well as a good foundation in algorithm development and in probability and stats. If you are dedicated to becoming an expert in the practice and problems of phylogenetic analysis, though, I doubt that any other book will give you a third of the knowledge or a tenth of the breadth. ... Read more | |
| 22. Handbook of Applied Optimization by P. M. Pardalos, Mauricio G. C. Resende, Panos M. Pardalos | |
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| 23. Genetics: Analysis and Principles by Robert J. Brooker, Robert Brooker | |
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(price subject to change: see help) Asin: 0072965975 Catlog: Book (2004-01-09) Publisher: McGraw-Hill Science/Engineering/Math Sales Rank: 284645 Average Customer Review: US | Canada | United Kingdom | Germany | France | Japan |
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Book Description Reviews (2)
For anyone who has taken Genetics, you'll account for the fact that it is not an easy course. Taking it without a professor present is even more challenging. Luckily this text is well written and easy to follow. The author uses a mix of theory and experiment examples to drive important concepts home. The language is not dry like in many Biology texts. Instead, it is easy to read, almost to the point of being enjoyable. There are a few things I really liked: Overall I'd give this book an A and it will remain in my collection of Biology texts.
I found myself reaching for other texts, and "Genetics, Analysis and Principles" turned out to be the jewel. It is well balanced, very clearly written, and does not spend its time making students read long memory lists of genes or proteins that the class is going to forget less than two weeks after the term. I think this is largely reflected by the way he wrote the book; with input from students. Reading the intro I was afraid that this text was going to be way over into the experimental design/ data side which I've seen in other texts mean "no content". Not so this text; experimental design has been written into the book to describe genetics and content, not replace it. I think what is truely unique about this book is the use of scientific process as a way to teach concepts. I wish I had more books like this one for other courses. I hope Dr. Brooker's format for Biology (and yes other science courses) is adopted for other courses. If you are considering a text for your Genetics classes, I think you will be very pleased with this book. ... Read more | |
| 24. The Third Chimpanzee : The Evolution and Future of the Human Animal by Jared M. Diamond | |
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Amazon.com The chapters in The Third Chimpanzee on the oddities of human reproductive biology were later expanded in Why Is Sex Fun? Here, they're linked to Diamond's views of human psychology and history. Diamond is officially a physiologist at UCLA medical school, but he's also one of the best birdwatchers in the world. The current scientific consensus that "primitive" humans created ecological catastrophes in the Pacific islands, Australia, and the New World owes a great deal to his fieldwork and insight. In Diamond's view, the current global ecological crisis isn't due to modern technology per se, but to basic weaknesses in human nature. But, he says, "I'm cautiously optimistic. If we will learn from our past that I have traced, our own future may yet prove brighter than that of the other two chimpanzees."--Mary Ellen Curtin Reviews (57)
The book tries to answer the questions of what it means to be human, and how we are different from other life forms. This might sound like a cliché, but as Diamond delves into ethics, sex, history, evolution, and drug abuse, and comes out with his grim but guardedly optimistic conclusions, it seems apparent to me, at least, that what he is saying is of utmost importance to everyone in the world. Having read the book _Ishmael_, by Daniel Quinn, a few years ago, I wonder if Diamond's thinking could actually be improved by being combined with Quinn's. Diamond suggests that, when prehistoric societies drove certain animals to extinction, they were acting out a human tendency to be destructive to our local environments that is simply horribly intensified today. Quinn suggests that some of those prehistoric societies were not particularly more destructive than other animals, and for the same reasons; while other, more civilized societies had the tendency to be destructive because of their cultures' inclinations, and passed this tendency on to us, their cultural descendants. Of course, if Quinn is correct, our culture must be changed, a daunting task; while if Diamond is correct, the solution is unclear. He suggests that we may in fact be learning to change our behavior, in our own self-interest. I don't see much evidence of this offhand. (Although recent books by Paul Hawken and Ray C. Anderson suggest that business can be reformed in a way that's good both economically and ecologically; they're next on my reading list!) Quinn and Diamond alike offer a very cautious hope for our ecological future: that we may learn from the errors of the past and change our behavior accordingly. But how easy it is to sit and type platitudes about the fate of all human life! Read the book; I'm going to reread it myself, in order to thoroughly take in its meaning. If anyone is interested in discussing these topics, please email me.
At each chapter of the Third Chimpanzee we learn a totally new subject in the Jared Diamond style: a well-thought synthesis, a simple and organized presentation. Every other twenty pages was a new adventure for me. Obviously, this might not be the case for other readers that are more acquainted with evolution readings, and obviously I need a lot to learn before I can decide their authenticity but I found his ideas on subjects like extraterrestrial life and evolution of drug abuse very original and provoking. I also found his narration of the issues of Indo-European Languages spreading, mate selection, animal art and genocide very moving and comprehensive. A surprise for me was that this book tells the main concept of GGS thoroughly in just two chapters. Given the occasionally criticized redundancy and large volume of GGS, I might humbly suggest a prospective reader of Diamond who has limited time to read this book instead of GGS. For sure, GGS gives a much better and extensive treatise of the concept and it is also a must read book for anybody who wants to put a perspective to human history. Third Chimpanzee also gives a perspective to human psychology and I sincerely recommend it to anybody interested in these two subjects.
I only give the book four stars for two reasons:
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| 25. Cell and Molecular Biology : Concepts and Experiments by GeraldKarp | |
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Reviews (4)
Basil Numan((MEDICINE STUDENT 1ST YEAR)).
Thanks you very much ... Read more | |
| 26. Principles of Genetics by D. PeterSnustad, Michael J.Simmons | |
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our price: $119.95 (price subject to change: see help) Asin: 0471441805 Catlog: Book (2002-07-12) Publisher: Wiley Sales Rank: 233682 Average Customer Review: US | Canada | United Kingdom | Germany | France | Japan |
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Another characteristic that makes this work stand out is it's sheer beauty. The illustrations, photographs, charts, and even the layout are absolutely gorgeous! Hey, I'm not one who judges a book by the cover, but even the cover is beautiful! The artwork is well thought out and easy to understand. Many parts of the text can be reviewed plainly by looking at the pictorial descriptions without necessitating too much re-reading of the sections. The authors also include well-placed "sidelights" throughout the book to help the reader get a "real-life" connection to subject. And the sidelights are mostly about what we care about most...ourselves. Thus, in addition to constant reference to medical applications here and there, the sidelights help the reader appreciate what genetics is all about. Another important aspect of this text is that it is up to date. The authors have taken into consideration the exponential advances in the field and documented it here. That is just one more plus to this already fantastic piece of work!
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| 27. The Blind Watchmaker: Why the Evidence of Evolution Reveals a Universe Without Design by Richard Dawkins | |
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our price: $10.85 (price subject to change: see help) Asin: 0393315703 Catlog: Book (1996-09-01) Publisher: W. W. Norton & Company Sales Rank: 1474 Average Customer Review: US | Canada | United Kingdom | Germany | France | Japan |
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Amazon.com The title of this 1986 work, Dawkins's second book, refers to the Rev.William Paley's 1802 work, Natural Theology, which argued that just as finding a watch would lead you to conclude that a watchmaker must exist, the complexity of living organisms proves that a Creator exists. Not so, says Dawkins: "All appearances to the contrary, the only watchmaker in nature is the blind forces of physics, albeit deployed in a very special way... it is the blind watchmaker." Dawkins is a hard-core scientist: he doesn't just tell you what is so, he shows you how to find out for yourself. For this book, he wrote Biomorph, one of the first artificial life programs. You can check Dawkins's results on your own Mac or PC. Reviews (234)
The "Blind Watchmaker" of this book refers to Darwin's theory of evolution by natural selection. For, the watch is an intricate piece of machinery that surely requires a watchmaker to piece together all it's inner workings. The analogy has been made (specifically in Rev. William Paley's "Natural Theology") that the universe as we know it can be seen as an intricate working similar to that of a watch, and thus the universe must also have a maker of it's own. Dawkins points out that if one chooses to go along with this analogy, then evolution by natural selection would be the watchmaker, and this maker is indeed blind. Blind in the sense that evolution has no direction, no goals, and no predetermined stopping point. Dawkins uses extremely convincing analogies such as the intricacies of the eye, the sonar used by bats, and even several computer simulations, using programs he wrote, to support his arguments. Small changes, mutations, give rise to phenotypic traits that are advantageous to a particular species, or a subset of a species, and thus this mutation persists. Over geologic time, then, a few small photoreceptor cells may eventually become the eyes we know of today. As a biology major, this book was a must-read. However, one thing I really loved about this book is that you don't have to be a biology major to understand and appreciate the points Dawkins makes. He draws the reader through his analogies and explanations using simple layman's terms, and everyday examples that are easily understood. My only complaint is that some of his examples can be rather long-winded, redundant, and circuitous. Indeed, Dawkins can be rather verbose at times. Nonetheless, I feel that this is a must-read book for anyone who is either still on the fence with regards to creationist theory, or anyone who wants to open their eyes to some easily digestible science. Overall this was a very well written argument for a universe without design, and this theory, if not this book, should not be overlooked.
I want to briefly comment on Dawkins' reliance on genetic algorithms' ability to randomly generate intelligent results that only *appear* to have design -- given enough iterations -- as evidence that random processes created the first living cell. What is missing in his reasoning is the crucial part of the algorithm's loop: the feedback test. That is, the determination at each iteration as to whether a current mutation is closer or farther, from the desired optimal result. This, of course requires a comparison with the desired (fully developed) output. The Programer designs the genetic algorithm, and of course, the Programmer designs the goal of that algorithm. The fact that the designer does not care how the result is attained does not remove the fact that he defines what the result should do. "The fountain does not rise above its source" I recommend this book because it is an excellent example of how a researcher often can only assemble evidence, filtered by his preconcieved notions, in accordance with his desired result.
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| 28. Unearthing the Dragon by Mark A. Norell, Mick Ellison | |
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| 29. Human Heredity : Principles and Issues (with InfoTrac) by Michael Cummings | |
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our price: $107.95 (price subject to change: see help) Asin: 0534394744 Catlog: Book (2002-08-12) Publisher: Brooks Cole Sales Rank: 235433 Average Customer Review: US | Canada | United Kingdom | Germany | France | Japan |
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Book Description Reviews (2)
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| 30. Genetics:From Genes to Genomes by LelandHartwell, LeroyHood, Michael L. Goldberg, Lee M. Silver, Ruth C. Veres, AnnReynolds | |
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our price: $123.12 (price subject to change: see help) Asin: 0072462485 Catlog: Book (2003-03-04) Publisher: McGraw-Hill Science/Engineering/Math Sales Rank: 147937 Average Customer Review: US | Canada | United Kingdom | Germany | France | Japan |
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Book Description Reviews (2)
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| 31. Dinosaurs the Defiinitive Pop-up: Dinosaurs the Defiinitive Pop-up by Robert Sabuda, Matthew Reinhart | |
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our price: $17.81 (price subject to change: see help) Asin: 0763622281 Catlog: Book (2005-08-31) Publisher: Candlewick Press (MA) Sales Rank: 23043 US | Canada | United Kingdom | Germany | France | Japan |
| 32. Evolution of the Vertebrates: A History of the Backboned Animals Through Time by Edwin Harris Colbert, Michael Morales | |
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(price subject to change: see help) Asin: 0471850748 Catlog: Book (1991-03) Publisher: Wiley-Liss Sales Rank: 578737 US | Canada | United Kingdom | Germany | France | Japan |
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| 33. Microbiology for the Health Sciences (4th Edition) by Marcus M. Jensen, Donald N. Wright, Richard A. Robison | |
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our price: $130.00 (price subject to change: see help) Asin: 0132514648 Catlog: Book (1996-08-30) Publisher: Prentice Hall Sales Rank: 227952 US | Canada | United Kingdom | Germany | France | Japan |
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| 34. An Introduction to Genetic Analysis & CD-Rom by David T. Suzuki, Richard C. Lewontin, William M. Gelbart, Jeffrey H. Miller, Anthony J.F. Griffiths | |
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our price: $114.95 (price subject to change: see help) Asin: 071673771X Catlog: Book (2000-02-04) Publisher: W. H. Freeman Sales Rank: 130642 Average Customer Review: US | Canada | United Kingdom | Germany | France | Japan |
Reviews (6)
There are many, many diagrams and photographs which help to solidify understanding, and they are all in full color. It is organized very well, although this organization has changed from edition to edition and any teacher or student using it in their courses should be aware that chapters and problems in this newer version do not always coincide with those in previous editions. The questions are excellent as well, although purchasing the solutions manual is a wise idea (it is also very well done, with long, detailed explanations of the answers to the problems). Overall, of the 3 or 4 genetics textbooks I've looked at, this is by far the best one. In fact, it's one of the best textbooks I've ever used for any class. This one's a keeper.
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| 35. Recombinant DNA by Mark Zoller, James Watson, Michael Gilman, Jan Witkowski | |
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our price: $90.95 (price subject to change: see help) Asin: 0716722828 Catlog: Book (1992-02-15) Publisher: W. H. Freeman Sales Rank: 205060 Average Customer Review: US | Canada | United Kingdom | Germany | France | Japan |
Reviews (11)
Update in 2003: they want $100 for this?!? GMZ, PhD
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| 36. How the Mind Works by Steven Pinker | |
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(price subject to change: see help) Asin: 0393045358 Catlog: Book (1997-10-01) Publisher: W W Norton & Co Inc Sales Rank: 190794 Average Customer Review: US | Canada | United Kingdom | Germany | France | Japan |
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Amazon.com Reviews (139)
By arguing that "the mind is a system of organs of computation, designed by natural selection to solve the kinds of problems our ancestors faced in their foraging way of life, in particular, understanding and outmaneuvering objects, animals, plants, and other people," (21) Pinker rejects most other views of the mind that have held sway in the last century. By insisting on the complexity of the mind, Pinker claims that a) thinking is a kind of computation used to work with configurations of symbols, b) that the mind is organized into specialized modules or mental organs, c) that the basic logic of the modules is contained in our genetic program, and d) that natural selection shaped these operations to facilitate replication of genes into the next generation (21, 25). Pinker thus shows that the computational model of mind is highly significant because it has solved not only philosophical problems, but also started the computer revolution, posed important neuroscience questions, and provided psychology with a very valuable research agenda (77). By examining mental processes which are reverse-engineerable, Pinker lays the groundwork for examining which cognitive processes aren't yet understandable. For example, chapter 4, "The Mind's Eye," describes how the mind's vision process turns retinal images into mental representations, how the mind moves "splashes of light to concepts of objects, and beyond them to a kind of interaction between seeing and thinking known as mental imagery" (214). By describing a specific modular process, Pinker shows how this modular process fits together like a puzzle, as well as with other parts of the mind. Taken together the chapters thus also show what processes, such as sentience and especially consciousness, are still not readily explained. Pinker asks not only how scientists might understand "the psychology of the arts, humor, religion, and philosophy within the theme of this book, that the mind is a naturally selected neural computer" but also why they are so resistantly inscrutable (521). He suggests that the arts "engage not only the psychology of aesthetics but the psychology of status," thus making the arts more readily understood by economics and social psychology (521). According to Pinker, consciousness, too, resists understanding. He asks: "How could an event of neural information-processing cause the feel of a toothache or the taste of lemon or the color purple?" (558) thus highlighting the important 'Gordian-knot' question of causality in consciousness. In suggesting that such questions are difficult because Homo Sapiens' minds don't have the cognitive equipment to solve them, "because our minds are organs, not pipelines to truth" (561), he emphasizes the significance of natural selection in shaping the mind to solve matters of life and death for our ancestors (356) and leaves open the possibility of explaining consciousness at a later date. Pinker's book is significant, therefore, because it explains both how many aspects of the mind work, as well as what we don't yet know about how the mind works. In his conclusion, Pinker offers only tentative answers about why scientists don't understand consciousness, for example, and leaves open the possibility that we may never understand it.
Previously I had read 'Why Sex is Fun?' by Jared Diamond and during this book I realised that the title is totally misleading. It suggests that sex was developed by a conscious entity who thought - 'How can I make this work? I know, I'll make it fun.' For me this is back to front. We are here - our species - because sex just happens to be fun. If it were unpleasant or a chore we probably wouldn't be here. So here we are again looking at evolution and trying to justify human behaviour as somehow driven by genetic imperatives - as if the genes are trying to meet objectives. For me, this is crazy. The genes are the accidental vehicles that keep the species going, but they don't do it by design. And midway through the chapter on families in Mr Pinker's book I realised something new. All we can tell about our existence from evolution is that the species is still here, and something about the way we do things has contributed to that. But Bonobos are here too and they behave in an entirely different way - despite that, they are successful in terms of evolution. But as soon as Mr Pinker talks of the individual male wanting to promote his genes in advance of another man's I know the argument has gone off the rails. We are now talking about - not persistence of the species (which is demonstrable), but persistence of the particular family (which I suspect is not demonstrable). As far as the species is concerned what difference does it make whose genes are being contributed as long as there is variety. OK, men do not like to be cuckolded but I don't think that that is an evolutionary matter. The psychological studies need to look elsewhere. I recommend this book because it will get you thinking, not that I agree with it necessarily. Recommended other reading: One that you might like to consider, but I hated: | |
| 37. Evolutionary Psychology: The New Science of the Mind, Second Edition by David Buss | |
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Book Description Reviews (11)
Evolution is such an intriguing and elegant theory on its approach to our current behavior. Boss's contention is that the present behaviors we see today in our modern era -- fear of snakes, high male sexual drive -- arose from our ancestors. Those who did not have such characteristics did not become our ancestors. Thus, over time, certain characteristics were more likely to be successful in the mating process, and those are the same characteristics we see today. Boss's insight required a lot of keen intellectual insight into many different hypothesis. Some of these hypothesis seemed far-fetched at first. Who would think that there would be statistical differences in how maternal grandparents v. paternal grandparents relate to their grandchildren. There are, however. Maternal grandmothers have less risk in investing in a grandchild who is not biologically related since she is confident that her daughter is biologically hers, and she can be certain that her daughter's child is biologically related, too. The hypothesis that paternal grandfathers would be most distant -- since they have the most to lose -- turned out to be true. (Paternal grandfathers cannot be 100% certain that they fathered their son or daughter, and thus, they cannot be sure that that child's son or daughter is biologically related). This is perhaps one of the most important contributions in scientific literature since Watson and Clark's published report on their findings of DNA. Michael Gordon
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| 38. The Ancestor's Tale : A Pilgrimage to the Dawn of Evolution by Richard Dawkins | |
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our price: $16.80 (price subject to change: see help) Asin: 0618005838 Catlog: Book (2004-10-27) Publisher: Houghton Mifflin Sales Rank: 98 US | Canada | United Kingdom | Germany | France | Japan |
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From Amazon.co.uk The Ancestor's Tale takes us from our immediate human ancestors back through what he calls concestors, those shared with the apes, monkeys and other mammals and other vertebrates and beyond to the dim and distant microbial beginnings of life some 4 billion years ago. It is a remarkable story which is still very much in the process of being uncovered. And, of course from a scientist of Dawkins stature and reputation we get an insider's knowledge of the most up-to-date science and many of those involved in the research. And, as we have come to expect of Dawkins, it is told with a passionate commitment to scientific veracity and a nose for a good story. Dawkins's knowledge of the vast and wonderful sweep of life's diversity is admirable. Not only does it encompass the most interesting living representatives of so many groups of organisms but also the important and informative fossil ones, many of which have only been found in recent years. Dawkins sees his journey with its reverse chronology as cast in the form of an epic pilgrimage from the present to the past [and] all roads lead to the origin of life. It is, to my mind, a sensible and perfectly acceptable approach although some might complain about going against the grain of evolution. The great benefit for the general reader is that it begins with the more familiar present and the animals nearest and dearest to usourimmediate human ancestors. And then it delves back into the more remote and less familiar past with its droves of lesser known and extinct fossil forms. The whole pilgrimage is divided into 40 tales, each based around a group of organisms and discusses their role in the overall story. Genetic, morphological and fossil evidence is all taken into account and illustrated with a wealth of photos and drawings of living and fossils forms, evolutionary and distributional charts and maps through time, providing a visual compliment and complement to the text. The design also allows Dawkins to make numerous running comments and characteristic asides. There are also numerous references and a good index.-- Douglas Palmer | |
| 39. The Case of the Female Orgasm : Bias in the Science of Evolution, by Elisabeth A. Lloyd | |
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our price: $19.01 (price subject to change: see help) Asin: 0674017064 Catlog: Book (2005-04-22) Publisher: Harvard University Press Sales Rank: 4182 Average Customer Review: US | Canada | United Kingdom | Germany | France | Japan |
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Book Description Why women evolved to have orgasms--when most of their primate relatives don't--is a persistent mystery among evolutionary biologists. In pursuing this mystery, Elisabeth Lloyd arrives at another: How could anything as inadequate as the evolutionary explanations of the female orgasm have passed muster as science? A judicious and revealing look at all twenty evolutionary accounts of the trait of human female orgasm, Lloyd's book is at the same time a case study of how certain biases steer science astray. Over the past fifteen years, the effect of sexist or male-centered approaches to science has been hotly debated. Drawing especially on data from nonhuman primates and human sexology over eighty years, Lloyd shows what damage such bias does in the study of female orgasm. She also exposes a second pernicious form of bias that permeates the literature on female orgasms: a bias toward adaptationism. Here Lloyd's critique comes alive, demonstrating how most of the evolutionary accounts either are in conflict with, or lack, certain types of evidence necessary to make their cases--how they simply assume that female orgasm must exist because it helped females in the past reproduce. As she weighs the evidence, Lloyd takes on nearly everyone who has written on the subject: evolutionists, animal behaviorists, and feminists alike. Her clearly and cogently writ | |