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| 41. The Evolution of the Genome by T. Ryan Gregory | |
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| 42. A Primer of Population Genetics by Daniel L. Hartl | |
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Book Description The book is organized as a user's guide to population genetics. Chapter 1 starts with the basic concepts of molecular genetics and examines the principal methods by which DNA (or proteins) can be manipulated to reveal genetic polymorphisms in any population. Chapter 1 also includes the principles of population genetics underlying the organization of genetic variation in populations, with special emphasis on random mating, linkage equilibrium and disequilibrium, and inbreeding. Chapter 2 examines the evolutionary processes that can change allele frequencies, including mutation, migration and population admixture, natural selection of various types, and random genetic drift. This chapter also includes an elementary explanation of the diffusion equations as used in population genetics. Chapter 3 is the core of molecular population genetics. It includes the analysis of nucleotide polymorphism and diversity based on coalescents, patterns of change in nucleotide and amino acid sequences with special emphasis on codon usage bias and amino acid polymorphisms, inferences based on comparisons of levels of polymorphism and divergence, molecular phylogenetics, and the population dynamics of transposable elements. Chapter 4 focuses on complex traits whose expression is influenced by multiple genes and environmental factors. It examines genetic effects on the components of phenotypic variation and the correlations between relatives, the evolution of quantitative traits in natural populations, and comes full circle with the use of molecular polymorphisms and candidate genes in the identification of quantitative trait loci underlying complex inheritance. As for mathematical rigor, while there are some equations, the emphasis is on explanation rather than derivation. Only elementary algebra is necessary to follow most of the material, but a familiarity with basic calculus is helpful for understanding diffusion equations, Poisson random fields, and complex threshold traits. Mathematical symbols are used consistently throughout the book, and when results from the theoretical literature are quoted, the original symbols have been changed as necessary to maintain consistency. Modern population genetics makes liberal use of acronyms-these are all defined in the text, and their interrelations and implications are discussed. For ease of reference there is a glossary of acronyms and other common abbreviations used in population genetics. The text also includes numerous practical examples showing how the theoretical concepts are applied to actual data, as well as chapter-end problems. | |
| 43. DNA Microarrays and Gene Expression : From Experiments to Data Analysis and Modeling by Pierre Baldi, G. Wesley Hatfield, Wesley G. Hatfield | |
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| 44. Mapping Human History : Genes, Race, and Our Common Origins by Steve Olson | |
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Book Description Reviews (31)
Olson explains why most geneticists believe that modern humans, no matter how different they may seem, are biologically very similar. There is no room in this book for theories about how one "race" is somehow better than another--or even for the idea that the term "race" has any meaning at all. Our cultures may have divided us, but our DNA betrays the fact that we are all descended from a small group of modern humans who lived in eastern Africa about 100,000 years ago. There simply hasn't been enough time to make us dramatically different from each other, despite what racists would have us believe. The theory that modern humans originated in Africa fairly recently and then spread throughout the world is still, of course, hotly debated. A number of reputable scientists favor the multiregional hypothesis, which claims that modern humans evolved in various places around the world from archaic populations already living in those regions. The mutliregional hypothesis implies that the differences between modern groups are deeply rooted in the very distant past. Olson clearly disagrees with that view, and he does a good job of presenting the genetic evidence that points to a more recent African origin (sometimes called the "Out of Africa II" hypothesis). In the course of doing so, Olson touches on many interesting points. A few of the more striking were these: First, Olson describes recent DNA research indicating that Neanderthals were in fact a different species from our own. This is another hotly debated proprosition, and I suspect that experts could criticize the DNA analysis that Olson describes on the grounds that it's pretty hard to make sense of 35,000 year old DNA. Still, Olson makes a good case that the new results are compelling and consistent with other evidence. Second, Olson describes the Jewish tradition that the male descendants of Aaron, the brother of Moses, will be the high priests of the Israelites. Genetic research among the kohanim (priests), who often have a surname like Cohen, Cohn, or Kahn, suggests that many of these persons are in fact descended from a common male ancestor, who may indeed have been Aaron. Finally, Olson explains why everyone on the planet at this point probably has some genetic material contributed by Julius Caesar and Confucius, among others. It's a small world after all, at least as far as our DNA is concerned. The only part of the book that I didn't enjoy were the last couple of chapters, which shift from the topic at hand (i.e., "mapping human history") to questions of ethics. While these issues are important, they are too complex to be explored well in the fifty or so pages that Olson alots to them, and the discussion tends to detract from the fascinating "deep history" that is the focus of the rest of the book.
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| 45. Human Genetics: Concepts and Applications by RickiLewis | |
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| 46. Human Genetics: Concepts and Applications w/ bound in OLC card by RickiLewis, Ricki Lewis | |
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| 47. Mouse Development: Patterning, Morphogenesis, and Organogenesis by Patrick P. Tam | |
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| 48. Principles of Population Genetics by Daniel L. Hartl, Andrew G. Clark | |
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| 49. Nature Via Nurture : Genes, Experience, and What Makes Us Human by Matt Ridley | |
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Amazon.com Ridley writes that the switches controlling our 30,000 or so genes notonly form the structures of our brains but do so in such a way as to cueoff the outside environment in a tidy feedback loop of body andbehavior. In fact, it seems clear that we have genetic "thermostats"that are turned up and down by environmental factors. He challenges bothscientific and folk concepts, from assumptions of what's malleable in aperson to sociobiological theories based solely on the "selfish gene." Ridley's proof is in the pudding for such touchy subjects as monogamy,aggression, and parenting, which we now understand have some geneticcontrols. Nevertheless, "the more we understand both our genes and ourinstincts, the less inevitable they seem." A consummate popularizer ofscience, Ridley once again provides a perfect mix of history, genetics,and sociology for readers hungry to understand the implications of thehuman genome sequence. --Therese Littleton Reviews (20)
The discussions in this book are dramatically and importantly different from other discussions of "Nature/Nurture", and I can hardly recommend it strongly enough. What is different is the degree of specificity that Ridley brings to the conversation. He demonstrates from a dozen different points of view HOW causality flows both ways, from the genes to the environment and back. He also pokes holes in logical fallacies one hears all the time - for example, the assertion that a feature is not genetic because the specific genes have not (and in some cases may not ever) been identified. A well-constructed twin study positively identifies heritability of traits; tracking that heritability back to a spot on a chromosome is useful and interesting but not necessary. There is also basic science here that the lay reader might not otherwise learn for years. For instance, until very recently it was thought that there was a one to one correlation between genes and their proteins. It was also unknown what, if any, purpose breaking genes apart into exons on the chromosome served. Now we have discovered that many - ninety five on one mouse gene - different versions of one exon can exist on the chromosome, allowing one gene to make many different versions of its protein. Different versions mediated by... environment, of course. Much of the information here is counter-intuitive. For instance, the more egalitarian a society is, the more the heritabilaty of traits becomes manifest. Potentially confusing, certainly mind-bending, and who better than Ridley to explain it? If you are interested in biology, read this book.
It seems that he's gone to great lengths to establish a postulate that genes are enabling forces that engage nature in some sort of a closed feed-back loop whereby they're switched on and off by yet other genes in response to the influences of outside events. This is fascinating and makes perfect sense. Yet we also learn of genes that govern our ability to pair-bond/ to form loving relationships, genes for agression vs timidity, genes for criminal behavior, genes for fear and courage, for intensity vs calmness, and a myriad of other behavioral traits, abilities and characteristics. Can these traits be changed by outside events? We find that restraint is the lynchpin of culture, and it's that which separates us from the apes. We also learn that specialization and division of labor are unique to humans relative to animals who have to do everything for themselves. This all has a plausible ring to it does it not? Again and again we're told of all the different ways that genes/nature are coupled with nurture/environment until we become intellectually dizzy with all the permutations of information derived from history, science and societal differences. We learn of the countless ways genes can and do interact. It's a full bucket of information! Then we get to the twin studies and the hereitability of traits and behavioral characteristics. This is fascinating. Identical twins have a far greater incidence of hereitible traits than fraternal twins. And, even if they've been separated at birth they show remarkable similarities in every way when they're reintroduced 35 years later, even when brought up in entirely different surroundings. Somehow the environmental side of the equation failed to switch those genes on and off in a way that would have radically changed their behavior in the interim. However, it's not politically correct to say this. After all, political correctness has always been the province of those on the Left who have made the claim that the perfect socialist man will result if inflenced with the proper environmental stimuli, from birth or otherwise. Ridley points out that this form of societal organization has resulted in gulags and mass murder, but that logic hasn't seemed to have affected the collective worldveiws of those who have what the author Thomas Sowell refers to as "the vision of the annointed." In any event, Ridley brings all of these competing theories into play while nudging his premise toward the middle of the political road. He does it well! The book "Taboo", by a track and field guy whose name escapes me, goes into great length on the dominance that some racial groups have in certain sports and in certain track and field events. Thomas Sowell has written repeatedly about how different nationalities have become adept at different tasks or trades in different areas of the world. And, J.Philip Rushton has written extensively on this subject in his book, "race, evolution and behavior." Whether one agrees with these gentlemen or not their work deserves discussion. While Ridley eschews this radioactive info he does go into the work of Jane Goodall with the Chimps in Gombi. I believe that Ridley is acutely aware of this point of view, but that he's doesn't want to be pegged as a radical in favor of genetic determinism (and I don't believe that he is a radical). However, he knows that when one goes too far in favor of "nurture" as a deciding behavioral factor that one can be caricatured and more easily dismissed by the political enemies of ones position. I'm hopeful that research will soon tell us what it is that makes it so common for humans to blind themselves from accepting new information into their old theories of how the world works; to tell us, how a man might change his belief system and subsequently his behavior patterns. When this feedback loop is established mankind will take a quantum leap forward. Ridley is a magnificent narrator in this endeavor and I look forward to his continuing tale with eager anticipation. The excitement is evident as new information flows into this on-going debate, and I agree with Ridley as he says, "it's the most profound intellectual moment in the history of mankind", truly a magic time to be alive!
He did this-- his book acknowledges, for example, that if you do a twin study of families in middle-class America, you have indirectly limited the influence of the environment (by excluding more diverse cultures) and therefore the influence of genes on variability in a trait will be larger. The problem is, he then proceeds to completely ignore this informative, nuanced view when tackling the controversial issues that get people interested in the Nature-Nurture debate in the first place (gender roles, homosexuality, and mental illness for example). Like so many science writers, he has little apparent knowledge of the humanities, social history, etc., and he holds his own preferred beliefs about human nature to a lower standard of proof than his opponents'. It is actually true that, as part of his defense of the idea of innate gender roles, he made reference to both the humorist Dave Barry *and* the popular work "Men are from Mars, Women are from Venus." Don't get me wrong, I like Dave Barry, but he would be the first one to point out that he's not a scientific authority on cross-cultural gender studies! Ridley claims that [American or British] men's focus on "things" over "relationships" is genetic, but this idea, combined with his bit on homosexuality, merely shows that he needs to travel more. In America, women have much gushier friendships than men-they have "girlfriends" but we aren't supposed to have "boyfriends"-but this is not true in most places. In Latin America and many parts of Asia, Africa, and southern Europe, it is normal for straight men to kiss each other, hold hands, sometimes even have rituals of commitment to their friendships, etc. This also challenges the "gay gene" hypothesis: if big chunks of what Americans call "gay" are considered to be "straight" throughout the rest of the world, what would the gay gene code for? Even if it coded strictly for sex, in Mexico the top boy is often considered straight, and plenty of people everywhere experiment outside their "official" orientation. What all of this shows is that even if you have a gene for something, language and culture get added to it to create the final meaning. Ridley even acknowledges this ("genes enable, they don't restrict") but doesn't follow his own theory to its logical conclusion. In his section about the genetic basis of monogamy, he infers that because Margaret Mead failed to find a truly sexually libertine society in Samoa, they must not exist anywhere. (Mead was seeking a society without a taboo on premarital sex, which she could now find in any major American city.) He also assumes that all experiments with open marriage in Western societies had failed; if he had actually taken the time to look, he would know that people still practice open marriage today. Yes, some people have a lot of trouble with jealousy and give up on it, but others I have met find that open relationships are second nature to them. So, if Mr. Ridley had taken the time to talk to anyone from the cultures he claims cannot exist, he could have an interesting discussion about individual differences in sexual jealousy (genetic or environmental?). Instead, we simply learn that, in addition to not knowing where the social history section of the library is, Matt Ridley also does not know how to find subcultures on the Internet or check his local alternative paper for club meetings. In an otherwise-well-written chapter, he says that schizophrenia genes might have survived natural selection because in another combination they can lead to inventiveness. Well and good, but another reason these genes could be passed down is because not all cultures see "hearing voices" as a bad thing-some even see it as a form of religious inspiration! Even among those cultures that do see it as bad, most cultures do not leave their ill members out in the woods to die. But in Ridley-land, our ancestors were apparently all American Republicans in gated communities who go on rants about the danger of socialized medicine! I find it truly scary that this man has written a book called "Sex and the Evolution of Human Nature." He doesn't know the first thing about the diversity of human sexuality, friendship, or love. On the other hand, his book HAS awakened me to a new truth: maybe the problem with advocates of genetic sources of behavior isn't so much the fact that they believe that human diversity comes from genetic sources, as the fact that they base their theories on so little knowledge of what human diversity actually entails. Whether it's based on genes, environment, both, or neither, there's a whole lot more under the sun than is dreamt of in Matt Ridley's philosophy.
Here he selects 12 'Hairy Scientists', some famous (eg Freud, Pavlov, Darwin), some not so famous, and weaves a wonderful story as he takes us through the highs and lows of their research & that of their contemporaries, bringing us right up to date with the Genome. With interesting anecdotes he brings each individual to life. The 7 moral conclusions at the end were particularly useful, especially No. 2 "being a good parent still matters" Given I'm now in the process of reading a similar book with some very poor illustrations, it was only afterwards looking back, that I see that I was entertained & educated without the need for any sketches or diagrams, and yet didn't feel cheated, deprived or confused.
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| 50. Origins of Life (CANTO) by Freeman J. Dyson | |
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His own theory about the origin of life is quite interesting and probably could be expanded upon, especially in light of other, similar mathematical treatments such as those of Manfred Eigen.
Dyson does not depend on hand-waving and vague argument to draw these conclusions. He reviews what is known and the main extant theories of life's origin, then introduces his own, using a "toy model" that abstracts the chemistry and draws conclusions about steady-state solutions that might work. As befits a great theoretician, it is an elegant and powerful bit of theorizing, but does not wander from the constraints of the chemistry -- as far as he knows. But Dyson is clear that the point of his model is to stimulate experiment, and that organic chemists will be the ones to judge the usefulness and viability of his assumptions. Unless you are a physicist, you won't follow some of his work in solving for the model, but you can trust the math and the physics when it comes from Freeman Dyson. Just glance at the equations and graphs, but follow the words in his model chapter and get a real feel for the kind of system that proto-life might have been. He makes a good case for the essence of life being complexity, and that the conceptual purity and rigor of the gene has distracted us from the "tangled bank" that life at all levels, from bacterial cell to ecosystem to economy, seems to exemplify. Error tolerance -- being able to carry on in the midst of junk and in spite of "mistakes" -- seems to be more characteristic of life than exactness. That's a pleasing notion in an uptight age.
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| 51. Developmental Plasticity and Evolution by Mary Jane West-Eberhard | |
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The book contains a masterful synthesis of biological facts and theories on the broadest of scales. It unites all disciplines within the biological sciences. It is not, however, merely an impressive review. Rather, it captures a vast collection of data and brilliantly organizes it around a set of fundamental principles about development and evolution from which the main messages of the book are crystallized. Whereas many of the concepts may be described as relatively simple, contemplating the connections between them, as well as their overall unification, becomes an infinitely more challenging and fascinating task. It is from this unification that West-Eberhard's coherent theory of development and evolution blossoms. Expertly guiding the reader from individual concepts to coherent theory, West-Eberhard captures our imagination at every twist and turn, and catapults the reader's mind in a myriad of unexpected directions. The writing is crisp, clean and captivating. The book is filled with exciting and highly felicitous examples from natural history, touching upon the lives of all kinds of organisms, from prions to elm trees and African elephants. The pages are richly textured with detailed examples, illustrations and various intellectual gems. One such delight is a discussion of Darwin's pangenesis theory and how it fails in light of sterile castes in the Hymenoptera. The book's main contribution to modern evolutionary biology is the revolutionary idea that environmental influences on development, not mutation, are the first order cause of design. This view is a fundamental alteration of emphasis in a field obsessed with genes, genetic drift and mass selection. The book places major emphasis on the importance of genetic accommodation, which occurs when developmentally-mediated changes in the phenotype are molded by quantitative genetic change. The hypothesis of genetic accommodation can be understood as beginning when the environment induces a phenotypic change. This change imposes a new selective regime onto pre-existing polygenic variation. In this way, we are encouraged to understand genes as "followers", as opposed to "leaders" in evolution. The variants can be inherited in subsequent generations if the environmental conditions inducing them are recurrent, and if there is genetic variation underlying the population in the developmental capacity to produce them. Natural selection will favor the spread of a particular environmentally-induced variant when it has positive effects on individual fitness. Although both mutation and environmental induction are considered important modes of initiation of new phenotypic variation, West-Eberhard's argument is that environmental induction is in fact more important. This thesis challenges the modern gene-centered view of evolution, and in so doing, drives the final nail in the coffin of the "one-gene-one-phenotype" illusion. The book encourages the view that a unified science of evolution can only be achieved with a thorough integration of development into evolutionary biology. To this end, Mary Jane West-Eberhard's treatise is an enormous success. By showing how environmentally influenced development contributes to the origin of novelty in all organisms, the book provides a key missing component of a modern evolutionary theory that biology has been lacking since Darwin. The book is essential reading for all graduate students, researchers and teachers of biology.
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| 52. DNA : The Secret of Life by JAMES D. WATSON, ANDREW BERRY | |
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Amazon.com In later chapters, Watson aims barbs at those who are concerned bygenetic tinkering, calling them "alarmists" who don't understand how theexperiments work. It is in these arguments that Watson may lose favorwith those whose notions of science were born after Silent Spring.Nevertheless, DNA encompasses both sides of the political issuesinvolved in genetics, and Watson is an enthusiastic proponent of debateon the subject. The book accompanies a 5-part PBS series. --ThereseLittleton Reviews (16)
Prior to the discovery of DNA, people have been playing around with heredity and the role of inheriting traits in breading animals and agriculture since the beginning of history. But with the developments of science, the study of genetics has brought more light to the subject. Watson talks about the people who contributed to the emerging field of genetics, from Gregor Mendel and Charles Darwin, through the "eugenics" movement of the early 1900's, to the Human Genome Project. By telling the stories of the struggles in science, with the author's frankness, honesty and wit, Watson gains authority and authenticity in the presentation of his information. This book is illuminating and will arouse an interest in the subject of genetics in every reader. My only personal problem with the book is that the author presents his opinions and perspectives within the text as if his opinions themselves were facts, while in truth there are many issues that are still debated. Watson starts with the founding assumption, or presupposition that life is the result of chance. He makes some unfounded assertions or conclusions that might have other alternate viewpoints. For example, he goes from talking about the chemical properties and processes of DNA replication, jumping to how life began in an "RNA world." He also implies that Arthur Kornberg had created "life in a test tube," while Kornberg himself has written that he did not, in fact, create life. (Journal of Bacteriology) Watson also asserts that, "The Human Genome Project has proved Darwin more right than Darwin himself would ever have dared dream." But on what basis can he say this? The HGP merely sequenced and mapped DNA and cannot prove anything by itself. Watson employs circular thinking to support evolutionary claims: "proofs" that are founded on the presupposition that humans are results of evolution. The primary argument for evolution is the similarity between all biological systems. But, what if all biological systems were designed similarly on purpose? If something works well in one place, why redesign it? Watson believes that the "grandest mission" of molecular biology is to answer questions about ourselves and our origins as a species. But, as long as scientists start with the presupposition that humans are the result of evolution, the results will always be interpreted that way. So my only caution is that you should distinguish what is actually fact and what is merely the author's speculation. Anyway, I recommend this book to anyone who is interested in the subject of genetics. Watson presents almost every aspect of the subject in clear detail, and he is frank about the ethical and social implications of the discoveries that are sure to challenge traditional ways of thinking.
Here is a textboook which every child - on earth - should read. But where do we find teachers? DNA is fascinating. John Kerry's prominent jaw is a genetic trait.; he's not an alien but a fellow African. An ancestor way back had a mutated gene, that's all. I inherited my dad's bushy eyebrows. If you have freckles - well? Charlize Theron might have 100% perfect genes, but genes aren't everything. She and her mother speak a German dialect which is not genetic. Watson's book mistakenly implies DNA explains languages. The ability to speak is genetic , but thousands of separate languages evolved by usage; a prominent linguist suggests they all came from a common ancestral language. Out of Africa. Another mistake in Watson's book is asserting we will never know why humans created "culture." He's not an economist. I would love to explain how foraging tribes got into the art business, but Melinda Gates scoffs at my funding application. Microsoft, mysteriously, owns a chunk of the DNA action. The fundamental problem with this astounding book is that Watson and other DNA scientists cannot shake off the "Hitler problem" - extermination of genetically "inferior" people. Eugenics was a moronic American movement which led to vast horror - the Holocaust. Warson should be able to get his science off that hook, but doesn't. Can any teacher use this textbook without preaching eugenics?
DNA is not just a book about genes and DNA. It is about the essential nature of man himself, and the political controversies generated by the new insights. Is is a tale of how this new science is finally vanquishing the old wives' tales, the mantras of the bishops, and the ignorance of the wishful thinkers. Watson is a brilliant exponent of the hard truth over the comfortable conformity. He was, though, I thought, a little hard on the eugenics movement of the early part of the last century. This is an idea that has never really been vanquished, nor should it be--man will (hopefully) never cease to try to improve himself and his race. These men knew, as we must, that in these matters we are required to proceed in the absence of perfect information about the consequences of our natal policies. In a hundred years our present ignorance will stand revealed, as will that be two hundred years hence. Should we rely on what we know now, or should we only rely on tradition, theologians, and mass-media induced hysteria in the meantime? On race, Watson is courageous and not afraid to let the data take us where it will. He believes that we have a lot to learn yet on this subject, and is not ready to be pushed around by the dogmatists who are only to willing to tell us how to think. Good for him! The book is an excellent read, and is very attractive in its layout and generous illustrations. The writing style he uses is exceptionally clear--even conversational at times, navigating the space between talking down to the reader and an academic rant with great skill and sensitivity to his audience. It has a lot for the reader already knowledgeable about molecular biology, as well as, incredibly, the general reader. ... Read more | |
| 53. DNA Technology : The Awesome Skill by I. Edward Alcamo | |
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| 54. DNA Science: A First Course, Second Edition by David Micklos, Greg A. Freyer | |
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Book Description Proven through more than 10 years of teaching at research and nonresearch colleges and universities, junior colleges, community colleges, and advanced biology programs in high school, this book has been successfully integrated into introductory biology, general biology, genetics, microbiology, cell biology, molecular genetics, and molecular biology courses. The first eight chapters have been completely revised, extensively rewritten, and updated. The new coverage extends to the completion of the draft sequence of the human genome and the enormous impact these and other sequence data are having on medicine, research, and our view of human evolution. All sections on the concepts and techniques of molecular biology have been updated to reflect the current state of laboratory research. The laboratory experiments cover basic techniques of gene isolation and analysis, honed by over 10 years of classroom use to be thoroughly reliable, even in the hands of teachers and students with no prior experience. Extensive prelab notes at the beginning of each experiment explain how to schedule and prepare, while flow charts and icons make the protocols easy to follow. As in the first edition of this book, the laboratory course is completely supported by qualityassured products from the Carolina Biological Supply Company, from bulk reagents, to useable reagent systems, to singleuse kits, thus satisfying a broad range of teaching applications. Reviews (1)
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| 55. Principles of Gene Manipulation by Sandy B. Primrose, Richard M. Twyman, Robert W. Old | |
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Reviews (3)
It is written by biologists for biologists; very technical very exact; again just absolutely terrific for both review and in depth understanding. The only downfall I would say is that the Index isn't as good as it could be, but other than that I think every biology graduate student should own it....yeah its that good IMHO.
The last five chapters of the book are the most interesting ,for it is in these chapters that the authors discuss the genetic manipulation of animals, transgenic strategies, and biotechnology. We are all priveleged to be witnessing the development of new breeds of plants and animals, and hopefully this trend will continue in the 21st century. The impact of genetic engineering for medicine and agriculture will be immense, but even more mundance activities such as gardening and horticulture will be even more interesting with the development of new kinds of plants via transgenic strategies. In addition, genetic engineering is finding applications to areas outside of biology. It was recently reported that genetically engineered viruses are being used to assist in the development of quantum dots in microelectronics. Some of the features of the book I found particularly helpful or interesting were: 1. The numerous diagrams employed in the book that tie concepts together or give flow charts for laboratory procedures. 2. The discussion on the physics of gel electrophoresis. Apparently the dynamics of stained molecules undergoing electrophoresis is poorly understood. 3. The historical and anecdotal information that the authors include at various places in the book. 4. The discussion on optimizing translation. The degeneracy of the genetic code might lead one to believe that the choice of codons by genes is essentially a random process. The authors argue this is not the case and give excellent references for further reading on this. Apparently protein translation is a tight scheme, and again, this is surprising given the degeneracy of the genetic code. 5. The box on express sequence tags. The most interesting part of this discussion was on the legal issues involving the patenting of ESTs. The patent applications were rejected because ESTs were viewed as incomplete sequences. This rejection might serve as a precedent to future attempts to patent genes or complete genomes. Will some of these patents be rejected on the grounds that genes do not completely determine the protein(s) or phenotype(s)? Whatever the outcome, the legal profession in the 21st century will have to deal with information-theoretic criteria when addressing patent issues in genetic engineering. 6. The listing of the Internet tools available for gene sequencing and protein structure. 7. The discussion on the quantitative effect of sequence accuracy on gene accuracy, assuming the random occurence of sequencing errors. The diagram shown of average sequence-error rate versus the fraction of error-free genes shows clearly the importance of robust and precise sequence-similarity search algorithms. Interestingly, the authors argue that, in spite of the success of statistical methods in these algorithms, the use of these methods will decrease as new sequences are accumulated and sequence conservation is used as the criterion for gene identification. They do however state that these methods will still remain useful for localizing frame shifts and for the choice of the initiation codon. 8. The box on the modes of replication of circular DNA molecules. The biophysicist reader will appreciate the discussion on the two types of replication: by theta-like structures or the rolling-circle type of mechanism. 9. The discussion on applications of transgenic mice, position effects, and transgene silencing. The authors discussion of the efficacy of transgenic strategies in mice progeny is fascinating in that some mice progeny has expression that was very different from that of the parents, or even absent. The authors give a brief discussion of boundary elements and matrix attachment regions with references for further reading. 10. The short discussion on transgenic fish. 11. The box on control of transgene expression in plants. 12. The discussion on the use of immunosuppressant drugs as chemical inducers of dimerization. The side effects of these drugs has prompted research into finding transgene induction strategies that do not have these side-effects. 13. The discussion on post-translational inducible protein activity. 13. The discussion on visible marker genes, especially the discussion on green flourescent protein. 15. The discussion on the use of antisense RNA to regulate gene expression in prokaryotes. 16. The discussion on the use of cosuppression in increasing the amount of pigment synthesized by petunia flowers. The application of transgenic strategies to horticulture is indeed exciting and one that will hopefully result in new varieties of houseplants and garden fruits and vegetables. 17. The discussion on the role of functional genomics. 18. Transgenic animals and plants as bioreactors: Tracy and her progeny in producing AAT. 19. Xenotransplantation. This is no doubt one of the most controversial techniques used in genetic engineering today.
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| 56. Biochemistry & Genetics: PreTest Self-Assessment & Review by Golder N. Wilson | |
![]() | list price: $24.95
our price: $24.95 (price subject to change: see help) Asin: 0071375783 Catlog: Book (2001-08-06) Publisher: McGraw-Hill/Appleton & Lange Sales Rank: 215060 Average Customer Review: US | Canada | United Kingdom | Germany | France | Japan |
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Book Description Reviews (2)
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| 57. Drosophilia: A Laboratory Handbook by Michael Ashburner, Scott Hawley, Kent Golic | |
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our price: $185.00 (price subject to change: see help) Asin: 0879697067 Catlog: Book (2005-01-30) Publisher: Cold Spring Harbor Laboratory Press Sales Rank: 231818 US | Canada | United Kingdom | Germany | France | Japan |
| 58. Virus of the Mind:: The New Science of the Meme by Richard Brodie | |